Mahalanobis Altitude

Mahalanobis altitude is the multivariate generalization of finding how many standard deviations away a indicate is from the hateful of the multivariate distribution.

From: Data Science (Second Edition) , 2019

Volume 3

J. Ferré , in Comprehensive Chemometrics, 2009

3.02.4.2 Leverage versus Sample Index

The leverage and the Mahalanobis distance stand for, with a single value, the relative position of the whole x -vector of measured variables in the regression space. The sample leverage plot is the plot of the leverages versus sample (observation) number. A low value of h ii relative to the hateful leverage of the grooming objects indicates that the object is similar to the average training objects. A high h ii indicates that the x -vector is unusual and that the object carries unique x-information. Hence, objects with a much larger leverage than the rest are likely ten-outliers and should be inspected more than closely. No strict rules exist for deciding for what size of leverage the point is a 'leverage outlier'. The nearly used guideline is to declare loftier leverage indicate an observation with h ii > 2 h 21 or h ii > 3 h is the boilerplate leverage value for the preparation samples (see Section three.02.2.v). For spectroscopic calibration, the ASTM E1655-00 norm 27 also recommends the limit h ij > three h for deciding that a calibration sample must be eliminated from the scale fix in the evolution of the model. Note that a loftier leverage in a calibration sample indicates that the sample has an extreme value of a parameter as compared with the remainder of the grooming set up, for example, higher concentrations of analytes or of interferents. In addition, because an outlier in the ten-infinite is influential in LS-based methods, the leverage as well informs that the grooming sample has a relatively large influence on the model, and it attracts the model and then that the model describes the sample better. Recall, however, that the leverage alone does not indicate whether this sample has a 'good' or 'bad' upshot on the model. Hence, consider the leverage every bit a flag that a sample may potentially exert undue influence on the regression results due to its extreme position in relation to others. Whether this sample is 'bad' and should be avoided, or information technology should be included in the model, depends on considerations commented in Sections 3.02.three.3.3 and iii.02.3.3.four. Figure 12 shows the leverage values for the samples of the Octane information set up, calculated for a PCR model with 2 factors. It is restated that this model with two factors is not the optimal ane, but it makes it easier to understand the outcome of the leverage and the score plots (Section 3.02.4.3). Annotation how sample 26 has the largest leverage, which indicates that it is obviously very different from the rest and may be disturbing the model. Annotation also that sample 25 also has a high leverage, but not as loftier every bit i would look by looking at the plotted spectra in Figure 10 . The reason will be discussed later in Figure 13 . The idea is that the leverage simply takes into account the part of the spectrum that is modeled by the 2 regression factors, information technology does not take into account the unmodeled part (the x-residual due east x ). Hence, sample 25 will have a larger or a smaller leverage depending on how much of its spectrum is described by the master components model merely non on how much remains to be explained.

Effigy 12. Octane data set. Leverage for a PCR model with 2 factors. Samples 25 and 26 represent to the different spectra in Figure 10 .

Figure 13. Divergence between x-scores and ten-residuals in bilinear regression methods. For an initial space of three variables, the aeroplane represents the subspace spanned by the 2 factors of the regression model (note that the y is not shown hither). The scores are the projections of the objects in the plane. The residuals are the difference betwixt the original point and the modeled part. The 'plane' is that represented in Figure xiv for the Octane data gear up. These scores can be summarized by the leverage value. Points B and C volition accept a higher leverage than point A. The vertical residuals are represented in the Figure 15 . These residuals can exist summarized past the Q-value or by the residual variance, which is obtained after dividing Q by the advisable degrees of freedom. Note that the outlier A cannot be detected from its leverage value, as it falls in the center of the plot. Even so, it can be detected by its large ten-remainder.

A high leverage in a prediction sample is indicative of extrapolation. In this example, the ASTM E1655-00 norm 27 indicates that the leverage of the unknown sample h un must be compared to the maximum leverage of the calibration samples h max (provided that the training fix contains no outliers). If h un  >> h max, the prediction represents an extrapolation of the model, so we must suspect about the reliability of the predicted y and it should exist investigated further. The reason for this extrapolation may be diverse. On the one paw, the sample may contain the aforementioned components equally the training samples, only at concentrations that are outside the ranges in the training set. In this example, the prediction involves an extrapolation of the model and a large prediction doubt. On the other hand, a high leverage may be caused by the sample containing unmodeled x-variations. Some sources of these unmodeled variations were outlined in Section three.02.3.3.3 and include instrument failure, recoding the data at different experimental weather, but likewise the presence of new components (interferents) in the sample. In bilinear regression, part of these unmodeled variations will be orthogonal to the model, and remain in the x-residuals (eastward x ) and some other office will be projected down to the subspace spanned past the factors and contribute to the prediction, increasing the prediction bias. The amount of bias will depend on the degree of orthogonality betwixt the contribution of the interference to the measured x and the vector of regression coefficients b. Hopefully, the unmodeled contribution will produce a very unlike score when projected onto the model factors, so the sample will be detected as having a high leverage. And the remaining part volition be detected when studying the x-residuals.

Note that for cistron-based models, the leverages can be calculated for a different number of components. It is useful to report how the influence of each sample evolves with the number of components in the model.

Another measure out often used for detecting ten-outliers is the Mahalanobis altitude. The difference between using MD i or h 2 resides in the critical value used to notice training x-outliers. Whereas h ii is compared to a multiple of the average value of leverages in the grooming set, MD i 2 is compared to the quantiles of χtwo-distribution with (K    one) degrees of freedom (Rousseeuw and Leroy, 4 p 224) or to the values of an F-distribution, assuming that the data come from a multivariate normal distribution. Critical values of the Mahalanobis distance and the jackknifed Mahalanobis distance for testing a single multivariate outlier are given by Penny. 109

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Computational Statistics with R

Hrishikesh D. Vinod , in Handbook of Statistics, 2014

four.3 Mahalanobis Altitude and Outlier Detection

R installation comes with a function "mahalanobis" which returns the squared Mahalanobis altitude D 2 of all rows in a matrix from the "eye" vector μ, with respect to (wrt) the covariance matrix Σ, defined for a single column vector x equally

(8) D two = ( x μ ) Σ 1 ( x μ ) .

For our matrix "A," the squared Mahalanobis altitude of each ascertainment along a row from the vector of column means wrt the covariance matrix is computed past the R code:

D2=mahalanobis(A, center=colMeans(A), cov=cov(A))

caput(sqrt(D2), 6)

Mahalanobis distance is the squared root. Pinnacle vi distances of each observation from its mean are reported side by side for our A matrix. They are plotted as a solid line in Fig. 1 in the sequel.

Figure 1. Matrix A from cars data Mahalanobis distances (solid line) robust Mahalanobis distances (dashed line).

[1] 0.9213683 0.9213683 1.2583771 ane.2474196 1.6390516 1.4121237

Mahalanobis distance has many applications in diverse fields including detection of outliers. For case, a big Mahalanobis distance from the balance of the sample of points is said to have higher leverage since it has a greater "influence" on coefficients of the regression equation.

It is well known that the mean and standard deviation are very sensitive to outliers. Since Mahalanobis distance uses these nonrobust measures, recently researchers have replaced the center and covariance by more robust measures.

crave(ICS) #library for robust heart, cov

robcov=cov.rob(A)

D2=mahalanobis(A, center=colMeans(A), cov=cov(A))

D2rob=mahalanobis(A, middle=robcov$eye,

  cov=robcov$cov)

plot(sqrt(D2rob),col="carmine", typ="l", ylab=

  "Mahalanobis Altitude", xlab="Observation Number",lty=2)

lines(sqrt(D2), typ="l")

title("Outlier detection using robust Mahalanobis distances")

Figure 1 plots two lines. The solid line is for the Mahalanobis distance D2, and the dashed line is for the robust Mahalanobis distance D2rob based on the robust measures of mean and covariance for the matrix A using cars data. It is not surprising that the solid line is less effective in identifying outliers than the dashed line based on robust measures.

Serfling (2009) discusses the use of D2 in "outlyingness functions," proves that it is affine invariant, and indicates applications for spatial distances.

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Multivariate Assay

P.One thousand. Bhattacharya , Prabir Burman , in Theory and Methods of Statistics, 2016

12.3.one Mahalanobis Distance

If Y ( μ , Σ ) , then the Mahalanobis distance between Y and μ is defined to exist Δ 2( Y , μ ) = ( Y μ ) T Σ −1( Y μ ). Similarly, if Y one ( μ 1 , Σ ) and Y ii ( μ ii , Σ ) , then Δ 2( Y one, Y 2) = ( Y 1 Y 2) T Σ −1( Y 1 Y 2). Note that Δ 2 is well defined simply if Σ is pd. It may exist worthwhile to point out that the positive square root of Δ 2 is a distance on R p (and not Δ 2).

An important property of Δ 2 is that it is invariant under nonsingular linear transformations. Allow Ten ane = a + BY ane, 10 2 = a + BY ii, where a is p × i, B is p × p and is nonsingular. Then Δ 2( X 1, X two) = Δ 2( Y one, Y 2). Mahalanobis distance comes upwardly naturally in multivariate analysis. For instance, if Y 1,   …, Y northward are iid ( μ , Σ ), so Δ ii ( Y ¯ , μ ) = n ( Y ¯ μ ) T Σ i ( Y ¯ μ ) . If we want to test H 0: μ = μ 0, so nosotros may use the Mahalanobis distance between Y and μ 0, that is, Δ 2 ( Y , μ 0 ) = northward ( Y ¯ μ 0 ) T Σ i ( Y ¯ μ 0 ) , equally a test statistic (bold that Σ is known). If Σ is unknown and an guess Σ ^ of Σ is available, then Δ 2( Y , μ 0) can exist approximated by due north ( Y ¯ μ 0 ) T Σ ^ 1 ( Y ¯ μ 0 ) .

In the univariate instance we often presume normality. However, except for prediction intervals, almost all the inference are approximately valid without normality of the population equally long as the sample size n is large. The same is likewise truthful in the multivariate example every bit long as northward is big relative to p.

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Some Multivariate Methods

Rand R. Wilcox , in Introduction to Robust Estimation and Hypothesis Testing (5th Edition), 2022

half dozen.two.1 Mahalanobis Depth

Certainly the best-known approach to measuring depth is based on the Mahalanobis altitude. The squared Mahalanobis distance between a point x (a column vector having length p) and the sample mean, Ten ¯ = ( 10 ¯ 1 , , X ¯ p ) , is

(6.i) d 2 = ( 10 10 ¯ ) S ane ( x X ¯ ) .

A convention is that the deepest points in a cloud of data should have the largest numerical depth. Following Liu and Singh (1997), the Mahalanobis depth is taken to be

(6.2) Thou D ( x ) = [ ane + ( x X ¯ ) S one ( 10 X ¯ ) ] 1 .

So the closer a point happens to be to the mean, as measured by Mahalanobis distance, the larger is its Mahalanobis depth.

Mahalanobis distance is non robust and is known to be unsatisfactory for certain purposes to exist described. Despite this, it has been plant to have value for a wide range of hypothesis testing issues, and information technology has the reward of beingness fast and like shooting fish in a barrel to compute with existing software.

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Computerized Record Linkage and Statistical Matching

Dean H. Judson , in Encyclopedia of Social Measurement, 2005

Mathematical Relationships

Each of the previously described techniques has common attributes. Mathematically, the techniques are like in effect. The Mahalanobis distance function has 2 important properties: (1) the diagonal cells of the Due south −1 represent variances, and hence "scale" the individual altitude calculations, and (2) the off-diagonal cells of the S −one represent covariances, and "deform" the individual altitude calculations. Note that the minimum value of any entry in the Due south −1 matrix is zero. There are no negative entries in the S −one matrix.

In gild to determine the relationship between the Mahalanobis measure out and the model-based measure out, brainstorm with the function to exist minimized:

Y 1 i Y two j T Y ane i Y 2 j = β X i i β X 2 j T β X 1 i β X 2 j = β 10 1 i X 2 j T β X 1 i 10 two j = X 1 i X 2 j T β T β Ten ane i X two j .

Now it is seen that the term β ˆ T β ˆ is the analogue to the S −i of the Mahalanobis distance measure. Instead of scaling the infinite by variances and covariances, the space is scaled by the estimated coefficients of the model, and cross-products of these estimated coefficients.

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Statistical Significance Versus Consequence Size

10. Fan , T.R. Konold , in International Encyclopedia of Education (Third Edition), 2010

Multivariate DYard

For multivariate group comparison (e.g., comparing of two groups on multiple effect variables, every bit in a Hotelling T 2 test or multivariate analysis of variance (MANOVA)), Mahalanobis distance ( D 1000 ) is the multivariate counterpart of d:

D M = ( X ¯ G 1 X ¯ G 2 ) ' Due south pooled 1 ( X ¯ G 1 X ¯ G 2 )

where X ¯ G 1 and 10 ¯ G 2 are the mean vectors of the ii groups in the comparison, ( X ¯ Grand one X ¯ Thousand 2 ) ' is the transposed mean vector difference, and S pooled 1 is the inverse of the pooled covariance matrix.

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Book three

P. Filzmoser , ... P.J. Van Espen , in Comprehensive Chemometrics, 2009

3.24.iii.vii.4 Multivariate S estimators

As in the regression context (come across Section 3.24.3.four.ii), it is possible to ascertain Southward estimators in the context of robust location and covariance estimation. 5,6 The idea is to make the Mahalanobis distances minor. The Mahalanobis or multivariate distances are defined as

d ( ten i , t , C ) = ( x i t ) T C 1 ( x i t ) for i = 1 , , north

for a location estimator t and a covariance figurer C. Notation that d is actually a squared distance. Thus, in contrast to the squared Euclidean distance

d ( x i , t , ) = ( 10 i t ) T ( x i t ) for i = 1 , , n

the Mahalanobis distance also accounts for the covariance structure of the data. Minor Mahalanobis distances can be achieved past using a scale calculator σ and minimizing σ(d(x 1, t, C),…, d(x n , t, C)) under the brake that the determinant of C is 1. Davies 5 suggested to take for the scale estimator southward an Yard reckoner of calibration, 1,2 which has been defined in Equation (15).

S estimators are affine equivariant, for differentiable ρ they are asymptotically normal, and for well-chosen ρ and δ, they achieve maximum breakdown point.

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Principles and Methods for Data Science

Deepak Nag Ayyala , in Handbook of Statistics, 2020

2.ane Independent observations

Start let us accost testing the hypothesis in (1) for i.i.d. samples in high dimension. When p > n + g − 2, the pooled sample covariance matrix S is rank-scarce and does not have a well-defined inverse. The Mahalanobis distance is therefore not a valid measure to study how different μ 1 μ 2 is from the zero vector. To construct a test statistic, we need a functional of X ¯ Y ¯ which is nothing in expectation when H 0 is true and nonzero when H A is truthful. A natural choice of such a functional which does not involve Due south is the d -norm of X ¯ Y ¯ , for d > 0. When d = 1, Chung and Fraser (1958) proposed a permutation exam using the sum of chemical element-wise t-examination statistics,

(3) T C F = 1000 = 1 p X ¯ k Y ¯ k S m g ,

as the test statistic. The p-values for this test statistic were computed using permutation method over the samples, and the authors practise non discuss the asymptotic or theoretical properties of the exam statistic. The Euclidean norm b is preferred over the 1-norm due to ease of calculation of moments. Dempster (1958) developed the first exam statistic using the Euclidean norm of difference of means, X ¯ Y ¯ Ten ¯ Y ¯ . The test statistic is given by

(4) T D due east m p = 10 ¯ Y ¯ 10 ¯ Y ¯ thou = 1 northward + one thousand 2 W k W thousand ,

where { West k , k = 1 , , n + m two } are orthogonal vectors such that the prepare of vectors { ( n + m ) 1 ( n X ¯ + m Y ¯ ) , X ¯ Y ¯ , W i , , Westward n + m ii } grade an orthogonal basis for the space spanned by { X 1 , , X n , Y 1 , , Y chiliad } . The Dempster test is nonexact, pregnant distribution of T Demp is derived assuming quadratic forms approximately follow a chi-squared distribution. The test statistic is and so distributed as an F r,(north+one thousand−2)r under the null hypothesis. The parameter r is unknown and is estimated from the data. Withal, both these tests, T Demp and T CF , ignore the covariance structure and are shown to non perform well fifty-fifty when p is shut to n + chiliad.

To construct a large-sample test, the asymptotic properties of the Euclidean norm of X ¯ Y ¯ need to be studied. When the two distributions are homogeneous with covariance matrix Σ, we have

(5) E X ¯ Y ¯ X ¯ Y ¯ = μ 1 μ 2 μ 1 μ ii + 1 n + 1 thousand tr Σ .

Without loss of generality, assume n < thou. Nether H 0, 10 ¯ Y ¯ X ¯ Y ¯ has expected value equal to B due north = ii ( 1 / n + 1 / m ) tr Σ 2 n i p λ max , where λ max is the largest eigenvalue of Σ. If p is fixed, then lim north B n = 0 , implying X ¯ Y ¯ X ¯ Y ¯ is asymptotically unbiased. Only if p increases with north, B n is not guaranteed to converge to zero, and hence the Euclidean norm needs to be adjusted for this bias. For example, if we assume p = Cn α for some α > 0, then B n = 2 due north α 1 λ max which diverges when α > 1. Farther notation that properties of B n are contained of the distributions of the 2 groups.

To conform the bias, consider the pooled sample covariance matrix S , which is unbiased for Σ. Since trace is a linear functional, tr ( S ) will be unbiased for tr(Σ). This gives

K north = X ¯ Y ¯ X ¯ Y ¯ n + one thousand due north thou tr S .

equally an unbiased estimator of μ 1 μ 2 μ ane μ 2 . Using its quadratic grade, the variance of M n can be calculated every bit var M due north = two ( ane / n + 1 / chiliad ) ii { 1 + 1 / ( north + yard 2 ) } tr Σ two { one + o ( 1 ) } . The error term, i + o(1), vanishes under Gaussian assumption. To construct a test statistic using M due north , a ratio consistent estimator of var Grand n is needed.

In their seminal work, Bai and Saranadasa (1996) used M due north to construct the examination statistic

(vi) T B S = X ¯ Y ¯ X ¯ Y ¯ northward + thou n m tr S n + chiliad due north m two ( n + m one ) ( n + yard 2 ) ( n + m ) ( n + yard 3 ) tr S 2 ( due north + m 2 ) 1 tr 2 Southward .

The test statistic follows a standard normal distribution asymptotically under the post-obit assumptions:

(BS I)

p/nδ > 0, indicating that p can increase faster than n.

(BS Two)

due north/(n + chiliad) → κ ∈ (0, 1) meaning sample sizes from both groups take proportionate rates of increase.

(BS III)

λ max = o tr Σ 2 , which relates to the forcefulness of the covariance structure.

(BS IV)

( μ one μ ii ) Σ ( μ ane μ 2 ) = o ( 1 / northward + 1 / m ) tr Σ 2 is a local alternative condition to summate the asymptotic power, under which the variance estimate remains ratio consequent.

Let us elaborate status (BS III) to empathise how potent the covariance structure can be. Consider the independent elements case, Σ = I with λ max = i and trΣ2 = p. Thus we take λ max / tr Σ ii = 1 / p 0 , which indicates the validity of the condition. If nosotros consider a moving average covariance construction with Σ ij = ρ |ij| for 0 < ρ < 1. Then we have λ max ( 1 + ρ ) / ( i ρ ) and trΣ2p(1 − ρ p )(1−ρ)−ane which also satisfies the status for all values of ρ. The condition, even so, does not allow covariance structures from the other finish of the spectrum: an exchangeable covariance structure with Σ ij = ρ for all i, j and for some 0 < ρ < 1 which has λ max = 1 + ( p ane ) ρ and trΣtwo = p + (p 2p)ρ 2. This gives

lim p λ max tr Σ 2 = lim p 1 + ( p 1 ) ρ p + ( p two p ) ρ two = ane ,

which does not satisfy the condition.

The Bai–Saranadasa test statistic is highly regarded in high-dimensional mean vector testing literature. In improver to extending the test to higher dimensions, information technology also relaxed the normality assumption on the samples. Instead, the observations are assumed to be coming from a factor model of the form

(7) X = μ + Γ Z ,

where Z = ( Z 1 , , Z p ) and Z i 's are continuous i.i.d. random variables with E(Z i ) = 0 and Due east ( Z i 4 ) = 3 + Δ < . The covariance structure is adamant by Γ through the human relationship Σ = ΓΓ. When Δ = 0, the elements of Z are normally distributed. When 0 < Δ < , the Z i 's have heavier tails than normal, nonetheless have finite moments. Examples of distributions satisfying the moment atmospheric condition are Laplace, double exponential distribution and centered gamma distribution.

In Eq. (5), the trace term comes only from the inner products of X i 's and Y j 's. For whatsoever i, we accept Eastward ( X i X i ) = μ 1 μ ane + north 1 tr Σ and E ( X i X j ) = μ 1 μ one when i  j. Hence subtracting the inner product terms from n 2 Due east ( X ¯ X ¯ ) and m ii E ( Y ¯ Y ¯ ) , we accept

E i j n X i 10 j = n ( north 1 ) μ 1 μ ane , E i j 1000 Y i Y j = one thousand ( m 1 ) μ ii μ ii , E i , j Ten i Y j = n yard μ 1 μ 2 .

Combining the terms in the above equation, the statistic

(8) T northward = 1 n ( n ane ) i j n Ten i X j + 1 m ( thousand i ) i j m Y i Y j 2 northward g i = ane northward j = 1 m Ten i Y j ,

has expected value equal to ( μ 1  μ 2)( μ 1  μ 2).

Chen and Qin (2010) constructed a examination statistic using T north as the functional, which has cipher expected value nether H 0. They causeless that the data follows the factor model in Eq. (seven). Sample sizes are restricted similar to (BS II). A major criticism of T BS has been the restriction of homogeneity of the 2 populations, i.due east., equal covariance structure. Addressing this issue is a major achievement of the Chen and Qin examination, which relaxed this status. The two populations are allowed to have unequal covariance structures, Σane and Σ2, respectively. This extension results in the local alternative condition in (BS 4) to be modified, with the charge per unit holding with respect to both Σane and Σtwo. Strength of the covariance matrix equally restricted past (BS III) is likewise modified to accommodate the heterogeneity. Another major accomplishment of the Chen and Qin test is removing a direct constraint betwixt p and due north as in (BS I).

The modified constraints on the model are summarized equally follows:

(CQ III)

tr Σ a Σ b Σ c Σ d = o tr 2 Σ one + Σ two 2 for a, b, c, d ∈{ane, ii}.

(CQ Iv)

μ 1 μ 2 Σ a μ 1 μ 2 = o ( due north + m 2 ) 1 tr Σ 1 + Σ 2 2 for a = i, 2.

Note that (CQ I) is relaxed and (CQ 2) is the same equally (BS II). Under the local culling, variance of T n is equal to

var T due north = 2 n ( north 1 ) tr Σ one 2 + 2 m ( m one ) tr Σ two 2 + four n m tr Σ 1 Σ 2 1 + o ( i ) .

As in T BS , tr ( S i two ) due north 1 tr 2 S 1 tin can exist used as a ratio consistent estimator of tr ( Σ 1 2 ) . Inspired by the removal of inner production terms in T n , Chen and Qin argue that similar rationale relaxes a direct relationship between p and n as in (BS I). They proposed ratio consistent estimators of the course

tr Σ i 2 ˆ = 1 n ( due north 1 ) tr i = 1 n j i Ten i X ¯ ( i , j ) X i 10 j X ¯ ( i , j ) X j , tr Σ two 2 ˆ = 1 g ( chiliad 1 ) tr i = ane grand j i Y i Y ¯ ( i , j ) Y i Y j Y ¯ ( i , j ) Y j , tr ( Σ one Σ ii ) ˆ = 1 due north 1000 tr i = 1 n j = i yard X i X ¯ ( i ) 10 i Y j Y ¯ ( j ) Y j ,

where X ¯ ( i ) = ( n i ) 1 m i n 10 k , X ¯ ( i , j ) = ( n 2 ) 1 one thousand i , j n X k , Y ¯ ( i ) = ( north 1 ) one k i n Y k and Y ¯ ( i , j ) = ( n 2 ) 1 1000 i , j n Y yard . Finally, the Chen–Qin test statistic is given past

(9) T C Q = T due north two n ( n ane ) tr Σ i two ˆ + 2 m ( m one ) tr Σ 2 ii ˆ + iv n m tr Σ one Σ 2 ˆ ,

which follows a normal distribution asymptotically under H 0.

In T BS and T CQ , the Euclidean norm is used as the functional to avoid inverting the sample covariance matrix, which is singular when p > n. While S is not invertible, the diagonal elements are all nonzeroes and invertible (a goose egg diagonal element implies the corresponding variable is a abiding and it tin exist removed from the analysis). Using the diagonal elements, a modified Mahalanobis altitude can be calculated equally a weighted Euclidean norm,

W n = X ¯ Y ¯ D S i X ¯ Y ¯ = chiliad = 1 p Ten ¯ yard Y ¯ thou 2 Due south g k ,

where D South is the p × p diagonal matrix of Due south . When the two groups are homogeneous, we have E X ¯ k Y ¯ yard 2 = μ 1 k μ ii k 2 + 1 / n + i / thou σ k k and E Due south chiliad k = ( n + thousand 2 ) / ( north + m ) σ k grand . As the ratio of these two expected values is independent of the index k, we have

Due east W northward = μ one μ two D Σ 1 μ 1 μ 2 + 1 n + 1 one thousand due north + grand n + m 2 p .

Like to the calculations in the Euclidean norm, it is straightforward to prove using the quadratic course that var Due west due north = ii tr R 2 1 + o ( 1 ) .

Srivastava and Du (2008) developed a test statistic based on Due west northward as the functional, adjusting for its expected value. The exam statistic is valid under the following assumptions:

(SD I)

The dimension increases at a polynomial rate with respect to due north, north = O p δ , i / 2 < δ 1 .

(SD Ii)

Sample sizes of the ii groups, n and 1000, are constrained as in (BS 2).

(SD Three)

If R is the population correlation matrix and λ 1 λ p are its eigenvalues, so lim p tr R k / p 0 ,   for k = 1, 2, 3, 4 and λ one = o p .

(SD Four)

Means of the two groups satisfy the local culling condition: μ 1 μ ii D Σ ane μ 1 μ 2 Yard p / ( n + yard ii ) ( ane / n + 1 / m ) for some finite constant Chiliad.

The Srivastava–Du exam statistic is given by

(x) T S D = due north grand n + m Ten ¯ Y ¯ D S 1 X ¯ Y ¯ ( n + g ) p due north + m 2 ii tr R 2 p 2 / n 1 + tr R two / p iii / two ,

where R = D South 1 / 2 S D S 1 / 2 is the sample correlation matrix. The test statistic is asymptotically normal under the zippo hypothesis.

The condition imposed on the correlation structure in (SD III) is very restrictive compared to (BS III) and (CQ III). For case, consider Σ = R = diag ( p ω , 1 , , 1 ) for some 1/iv ≤ ω < 1. Then trΣ2 = p + p 2ω − one, trΣ4 = p + p 4ω − 1 and λ max = p ω . (BS III) and (CQ Iii) are satisfied as

λ max tr Σ 2 = p ω p + p 2 ω one 0 , tr Σ 4 tr 2 Σ 2 = p + p 4 ω ane p + p 2 ω 1 2 0 .

For (SD III), we take λ max / p = p ω 1 / 2 0 just tr R 4 / p = p + p iv ω 1 / p = 1 + p 4 ω 1 p 1 , which is not bounded for ω > 1/four.

Another major constraint of the Srivastava–Du test is that the observations are assumed to be normally distributed. Dissimilar T BS and T CQ , asymptotically equivalent expressions for var ( W n ) are not established. Instead, verbal variance is derived using the properties of the normal distribution. In a sequence of papers, the authors have provided extensions to T SD to reduce some of the assumptions. In Srivastava (2009), the term trR 2/p 3/2 in the denominator of T SD was shown to converge to null and hence dropped. In Srivastava–Kano (Srivastava, 2013), an extension to the heterogeneous case was developed. However, this exam is inexact in the sense that the functional W n * has expected value equal to μ one μ 2 D Σ 1 μ 1 μ 2 only in limit.

Inspired by the idea of Chen and Qin (2010), Park and Ayyala (2013) modified the functional Westward north by removing the inner product terms. Using the true covariance diagonal, the functional

(11) U n * = 1 north ( northward 1 ) i j n X i D Σ 1 X j + 1 g ( m 1 ) i j m Y i D Σ one Y j 2 n m i = 1 n j = 1 1000 X i D Σ one Y j ,

has expected value μ ane μ 2 D Σ ane μ i μ 2 . Replacing the true covariances with consistent estimators, a leave-out approach has been implemented to maintain independence amidst the terms. For instance in X i D Σ 1 X j , the quantities X i , 10 j , and D Σ ˆ will be independent if D Σ ˆ is constructed past leaving out 10 i and X j . The pooled sample covariance matrix S = ( n 1 ) Due south 1 + ( grand one ) S two / ( north + grand 2 ) , where Southward 1 and S two are the sample covariance matrices of the two groups, respectively, is not useful because Southward one contains X i and Ten j . If these ii samples are removed from S 1 , then S i ( i , j ) = ( northward 3 ) i k i , j n Ten k Ten ¯ ( i , j ) X k Ten ¯ ( i , j ) , where X ¯ ( i , j ) = ( n 2 ) 1 chiliad i , j north Ten thousand will be contained of X i and X j . Similarly, for the 2nd and 3rd terms, we can define S 2 ( i , j ) , S 1 ( i ) and S two ( j ) , respectively, to maintain independence of terms. Then diagonals of the pooled sample estimators

S ( i , j ) ( 1 ) = ( n 3 ) S one ( i , j ) + ( chiliad 1 ) Southward 2 north + m 4 , Southward ( i , j ) ( 2 ) = ( n 1 ) Southward 1 + ( m 3 ) S 2 ( i , j ) n + m 4 , S ( i , j ) ( 12 ) = ( n two ) Southward 1 ( i ) + ( chiliad 2 ) S two ( j ) n + one thousand 4 ,

are used to construct the functional

(12) U n = n + grand 6 n + m iv 1 due north ( northward i ) i j north Ten i D S ( i , j ) ( i ) ane X j + 1 grand ( thousand i ) i j thou Y i D Due south ( i , j ) ( 2 ) 1 Y j 2 n m i = 1 n j = i m X i D S ( i , j ) ( 12 ) 1 Y j ,

which has expected value μ one μ two D Σ 1 μ one μ 2 .

From the quadratic form and independence of the terms, variance of U northward will be

var U due north = n + m 6 n + m iv 2 2 n ( n 1 ) tr R i two + 2 yard ( m ane ) tr R 2 2 + 4 n m tr R 1 R 2 ,

where R one and R ii are the correlation matrices of X and Y, respectively. A similar go out-out arroyo is applied to modify the standard correlation matrix estimate R 1 ˆ = D S 1 i / 2 South 1 D S one i / 2 . Centering the observations merely once as in T CQ and rearranging the terms, the estimators

tr R 1 ii ˆ = 1 northward ( n 1 ) tr i = ane n j i 10 i D S ( i , j ) ( 1 ) one X j X ¯ ( i , j ) 10 j D South ( i , j ) ( 1 ) ane X i 10 ¯ ( i , j ) , tr R 2 2 ˆ = 1 m ( grand 1 ) tr i = one m j i Y i D S ( i , j ) ( 2 ) 1 Y j Y ¯ ( i , j ) Y j D South ( i , j ) ( ii ) 1 Y i Y ¯ ( i , j ) , tr R 1 R 2 ˆ = 1 n thousand tr i = i due north j = 1 g 10 i D Southward ( i , j ) ( 12 ) ane Y j Y ¯ ( j ) Y j D S ( i , j ) ( 12 ) i X i Ten ¯ ( i ) ,

are shown to be ratio consequent for the corresponding terms in var U n . Standardizing U n by the variance figurer, the Park–Ayyala test statistic is given by

(13) T P A = U n due north + m 6 n + one thousand 4 two two north ( due north 1 ) tr R ane 2 ˆ + two m ( m 1 ) tr R 2 2 ˆ + 4 n m tr R i R 2 ˆ .

Asymptotic normality of the exam statistic was derived under the following assumptions:

(PA II)

Sample sizes of the two groups, northward and 1000 are constrained as in (BS 2).

(PA 3)

If R is the correlation matrix, then tr R 4 = o tr two R ii . This status is similar to (CQ III).

(PA IV)

The two group means satisfy the local alternative status n μ 1 μ 2 D S 1 / 2 R D S 1 / 2 μ 1 μ 2 = o tr 2 R 2 .

The assumptions in (PA II)–(PA IV) are milder than (SD I)–(SD IV) and hold for a much larger family of covariance structures. Another major advantage of T PA is that it does not crave the normality assumption. Instead, the exam is constructed assuming the factor model defined in Eq. (7).

The four test statistics have several key differences regarding their properties and performance. The Bai–Saranadasa examination and Chen–Qin test are orthogonal-transform invariant, i.e., the performance X i U X i , i = 1 , , n and Y j U Y j , j = 1 , , m for some p × p orthogonal matrix U does not affect the test. The Srivastava–Du exam and Park–Ayyala test are scale-transform invariant, wherein the performance described above does not affect the test when U = diag u 1 , , u p is a diagonal matrix. In do, scale transformation invariance is more than useful than its orthogonal counterpart as they can bring variables on to a uniform calibration. To amend sympathise this difference, consider the contribution of each element toward the expected difference under the alternative when μ 1 μ 2 = δ . In T BS and T CQ , grandth element has a contribution of δ k two , whereas in T SD and T PA the contribution is δ k ii / σ k k . While the sometime depends on the calibration of the variable, the latter is the coefficient of variation and is hence scale-gratuitous. In a scenario where the nonzero δ k 'south represent only to the values whose means are small, then T PA and T SD have higher power of detecting the difference.

Due to their similarities in construction and assumptions, T CQ and T PA are observed to be applicable to a broader range of models. This is mainly considering of relaxed assumptions on the covariance construction and lack of direct relationship between p and n. However, it is worth noting that the assumptions (BS I) and (SD I) are asymptotic and cannot be validated from a finite sample data set. For example, a information set with p = 10,000 and due north = 10 tin can either imply the rate is polynomial (p = n four) or linear (p = thoun). There is no applied means of determining the true rate with a single data set. Another aspect of this asymptotic rate that is worth considering is that the number of variables is generally deterministic. In genomics information sets such as DNA methylation or gene expression, the dimension is the number of genes, which is fixed. The sample size is the number of biological replicates, which tin can be increased by collecting more specimens. Hence charge per unit of increase cannot be used as a means to adopt one test to the other. A better approach to determine which method all-time suits a data set is through a simulation report. A controlled simulation study should exist designed using the properties of the data set such every bit dependence structure and sparsity. The empirical type I mistake obtained by specifying equal means can be used to compare the operation of the methods. This approach was used in Ayyala et al. (2015) to make up one's mind that T CQ outperforms the other tests at controlling type I mistake rate and achieves reasonable power for immunoprecipitation-based Dna methylation data.

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More Regression Methods

Rand R. Wilcox , in Introduction to Robust Estimation and Hypothesis Testing (Fifth Edition), 2022

Methods Based on a Robust Computer

A version of the percentile bootstrap method is used to exam Eq. (xi.12), the hypothesis that the regression lines are identical. Begin by resampling with replacement n vectors of observations from ( x i 1 , y i 1 , x i two , y i 2 ) , yielding ( 10 i ane , y i 1 , x i 2 , y i 2 ) . Let b eleven , b 12 , b 01 , and b 02 be the resulting estimates of the slopes and intercepts, respectively, based on this bootstrap sample. Let d k = b k i b m 2 ( one thousand = 0 , 1). Repeat this process B times, yielding d k b ( b = 1 , , B ). Permit D b denote some measure reflecting the altitude of d = ( d 0 , d 1 ) from the heart of the bootstrap data cloud, where the center of the information cloud is estimated with some robust calculator. One possibility is to use the Mahalanobis distance based on an estimate of the variances and covariances associated with the bootstrap values d 1000 b . Just when using a robust regression reckoner, situations are encountered where the sample covariance matrix based on a bootstrap sample is singular, which rules out using the Mahalanobis distance. Here, to avert this problem, projection distances are used as described in Section 6.ii.v and computed via the R office pdis. Let D 0 announce the altitude of the null vector from the eye of the bootstrap deject. Then from general theoretical results in Liu and Singh (1997), a p-value is given by

1 B I D 0 < D b ,

where the indicator function I D 0 < D b = 1 , if D 0 < D b ; otherwise, I D 0 < D b = 0 . This method is readily extended to more than than one independent variable, only simulation results on how well the method performs are limited to a single contained variable.

Next, consider the goal of testing the hypothesis

(eleven.16) H 0 : β thou i = β k 2 .

Then for yard = 0 , the naught hypothesis is that the intercepts are equal, and for m = 1 , the hypothesis is that the slopes are equal. This can be achieved using a bones percentile bootstrap method. For each k, put the d k values in ascending order, yielding d g ( 1 ) d k ( B ) . Let = α B / ii , u = ( 1 α / 2 ) B , rounded to the nearest integer, in which instance, an gauge 1 α confidence interval for β grand 1 β yard 2 is ( d one thousand ( + 1 ) , d k ( u ) ) .

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